Publications

2024

Journal Articles

Cyclo His-Pro Attenuates Muscle Degeneration in Murine Myopathy Models

A. De Masi; N. Zanou; K. Strotjohann; D. Lee; T. I. Lima et al. 

Advanced Science. 2024. DOI : 10.1002/advs.202305927.

Hippo-YAP/TAZ signalling coordinates adipose plasticity and energy balance by uncoupling leptin expression from fat mass

S. Choi; J-G. Kang; Y. T. H. Tran; S-H. Jeong; K-Y. Park et al. 

Nature Metabolism. 2024. Vol. 6, num. 5. DOI : 10.1038/s42255-024-01045-4.

Embracing cancer complexity: Hallmarks of systemic disease

C. Swanton; E. Bernard; C. Abbosh; F. Andre; J. Auwerx et al. 

Cell. 2024. Vol. 187, num. 7, p. 1589 – 1616. DOI : 10.1016/j.cell.2024.02.009.

Inhibition of SIRT7 overcomes sorafenib acquired resistance by suppressing ERK1/2 phosphorylation via the DDX3X-mediated NLRP3 inflammasome in hepatocellular carcinoma

Y. Kim; K-Y. Jung; Y. H. Kim; P. Xu; B. E. Kang et al. 

Drug Resistance Updates. 2024. Vol. 73, p. 101054. DOI : 10.1016/j.drup.2024.101054.

Theses

Drug Screening in C. elegans to identify new pharmacological mitochondrial stress inducers

A. Lalou / J. Auwerx (Dir.)  

Lausanne, EPFL, 2024. 

Datasets

Cellpose training data and scripts from “Inhibition of CERS1 in aging skeletal muscle exacerbates age-related muscle impairments”

M. Wohlwend; O. Burri; J. Auwerx 

2024.

2023

Journal Articles

Genetic and dietary modulators of the inflammatory response in the gastrointestinal tract of the BXD mouse genetic reference population

X. Li; J-D. H. Morel; G. Benegiamo; J. G. A. Poisson; A. Bachmann et al. 

Elife. 2023. Vol. 12, p. RP87569. DOI : 10.7554/eLife.87569.

Inhibition of CERS1 in skeletal muscle exacerbates age-related muscle dysfunction

M. Wohlwend; P-P. U. Laurila; L. Goeminne; T. Imamura de Lima; A. Lalou et al. 

eLife. 2023.  p. 35. DOI : 10.7554/eLife.90522.1.

Lysosomes mediate the mitochondrial UPR via mTORC1-dependent ATF4 phosphorylation

T. Y. Li; Q. Wang; A. W. Gao; X. Li; Y. Sun et al. 

Cell Discovery. 2023. Vol. 9, num. 1, p. 92. DOI : 10.1038/s41421-023-00589-1.

Cyclo(His-Pro): A further step in the management of steatohepatitis

A. De Masi; X. Li; D. Lee; J. Jeon; Q. Wang et al. 

Jhep Reports. 2023. Vol. 5, num. 9, p. 100815. DOI : 10.1016/j.jhepr.2023.100815.

Gene network based analysis identifies a coexpression module involved in regulating plasma lipids with high-fat diet response

F. Xu; J. Ziebarth; L. J. E. Goeminne; J. Gao; E. G. Williams et al. 

Journal Of Nutritional Biochemistry. 2023. Vol. 119, p. 109398. DOI : 10.1016/j.jnutbio.2023.109398.

Induction of mitochondrial recycling reverts age-associated decline of the hematopoietic and immune systems

M. Girotra; Y-H. Chiang; M. Charmoy; P. Ginefra; H. C. Hope et al. 

Nature Aging. 2023. DOI : 10.1038/s43587-023-00473-3.

Mitochondrial matrix protein LETMD1 maintains thermogenic capacity of brown adipose tissue in male mice

A. Park; K-e. Kim; I. Park; S. H. Lee; K-Y. Park et al. 

Nature Communications. 2023. Vol. 14, num. 1, p. 3746. DOI : 10.1038/s41467-023-39106-z.

Inhibiting de novo ceramide synthesis restores mitochondrial and protein homeostasis in muscle aging

T. I. Lima; P-P. Laurila; M. Wohlwend; J. D. Morel; L. J. E. Goeminne et al. 

Science Translational Medicine. 2023. Vol. 15, num. 696, p. eade6509. DOI : 10.1126/scitranslmed.ade6509.

Upregulation of the ERR γ-VDAC1 axis underlies the molecular pathogenesis of pancreatitis

D. Chanda; T. Thoudam; I. S. Sinam; C. W. Lim; M. Kim et al. 

Proceedings Of The National Academy Of Sciences Of The United States Of America. 2023. Vol. 120, num. 20, p. e2219644120. DOI : 10.1073/pnas.2219644120.

Mitochondria: A “pacemaker”for species-specific development

Y. J. Liu; J. Auwerx 

Molecular Cell. 2023. Vol. 83, num. 6, p. 824 – 826. DOI : 10.1016/j.molcel.2023.02.025.

Hepatic lipid overload triggers biliary epithelial cell activation via E2Fs

E. Yildiz; G. El Alam; A. Perino; A. Jalil; P-D. Denechaud et al. 

Elife. 2023. Vol. 12, p. e81926. DOI : 10.7554/eLife.81926.

Sodium ferrous citrate and 5-aminolevulinic acid improve type 2 diabetes by maintaining muscle and mitochondrial health

N. Kitamura; S. Zhang; J-D. Morel; U. Nagano; T. Taworntawat et al. 

Obesity. 2023. DOI : 10.1002/oby.23705.

The genetic background shapes the susceptibility to mitochondrial dysfunction and NASH progression

G. Benegiamo; G. V. G. von Alvensleben; S. Rodriguez-Lopez; L. J. E. Goeminne; A. M. Bachmann et al. 

Journal Of Experimental Medicine. 2023. Vol. 220, num. 4, p. e20221738. DOI : 10.1084/jem.20221738.

Mitochondrial and NAD plus metabolism predict recovery from acute kidney injury in a diverse mouse population

J. -D. Morel; M. B. Sleiman; T. Y. Li; G. von Alvensleben; A. M. Bachmann et al. 

Jci Insight. 2023. Vol. 8, num. 3, p. e164626. DOI : 10.1172/jci.insight.164626.

GPS2-mediated regulation of the adipocyte secretome modulates adipose tissue remodeling at the onset of diet-induced obesity

J. English; J. Orofino; C. T. Cederquist; I. Paul; H. Li et al. 

Molecular Metabolism. 2023. Vol. 69, p. 101682. DOI : 10.1016/j.molmet.2023.101682.

Conference Papers

ACMSD INHIBITION REDUCES HEPATIC INFLAMMATION AND FIBROSIS IN A MURINE THERMONEUTRALITY MODEL OF NASH

Y. Liu; M. Kimura; S. Rodriguez-Lopez; A. M. L. Scantlebery; K. Strotjohann et al. 

2023. Meeting of the American-Association-for-the-Study-of-Liver-Diseases (AASLD), Boston, MA, NOV 10-14, 2023. p. S1066 – S1066.

INHIBITING SARM1 IS MORE EFFICACIOUS THAN NICOTINAMIDE RIBOSIDE SUPPLEMENTATION FOR THE TREATMENT OF A MOUSE MODEL WITH NAFLD/NASH

Y. Liu; A. M. L. Scantlebery; K. Strotjohann; S. Rodriguez-Lopez; X. Li et al. 

2023. Meeting of the American-Association-for-the-Study-of-Liver-Diseases (AASLD), Boston, MA, NOV 10-14, 2023. p. S1108 – S1108.

CycloZ improves pulmonary fibrosis in bleomycin-induced idiopathic pulmonary fibrosis model mice by modulating the pathogenic transcriptome.

D. Lee; J. Jeon; S. Baek; O. Park; X. Li et al. 

2023. Annual congress of the European-Respiratory-Society (ERS), Milan, IA, SEP 09-13, 2023. DOI : 10.1183/13993003.congress-2023.PA3912.

CycloZ reduces inflammation in bleomycin-induced idiopathic pulmonary fibrosis model mice.

S. Baek; D. Lee; J. Jeon; O. Park; X. Li et al. 

2023. Annual congress of the European-Respiratory-Society (ERS), Milan, IA, SEP 09-13, 2023. DOI : 10.1183/13993003.congress-2023.PA3911.

Reviews

Mitophagy in human health, ageing and disease

A. Picca; J. Faitg; J. Auwerx; L. Ferrucci; D. D’Amico 

Nature Metabolism. 2023. Vol. 5, num. 12, p. 2047 – 2061. DOI : 10.1038/s42255-023-00930-8.

Theses

Characterization of Cyclo His-Pro for the prevention and treatment of liver disease and muscular dystrophy

A. De Masi / J. Auwerx (Dir.)  

Lausanne, EPFL, 2023. 

Identifying genetic and dietary modulators of metabolic disorders using systems genetics

X. Li / J. Auwerx (Dir.)  

Lausanne, EPFL, 2023. 

Patents

Tetracycline derivative induced mitohormesis mediates disease tolerance against viral infections

J. Auwerx; A. J. L. Mottis; M. Nelson 

EP4362953; WO2023274941; EP4112058.

2023.

2022

Journal Articles

Machine learning-derived gut microbiome signature predicts fatty liver disease in the presence of insulin resistance

B. E. Kang; A. Park; H. Yang; Y. Jo; T. G. Oh et al. 

Scientific Reports. 2022. Vol. 12, num. 1. DOI : 10.1038/s41598-022-26102-4.

SIRT7 suppresses energy expenditure and thermogenesis by regulating brown adipose tissue functions in mice

T. Yoshizawa; Y. Sato; S. U. Sobuz; T. Mizumoto; T. Tsuyama et al. 

Nature Communications. 2022. Vol. 13, num. 1, p. 7439. DOI : 10.1038/s41467-022-35219-z.

Sphingolipids accumulate in aged muscle, and their reduction counteracts sarcopenia

P-P. Laurila; M. Wohlwend; T. I. de Lima; P. Luan; S. Herzig et al. 

Nature Aging. 2022. Vol. 2, num. 12, p. 1159 – +. DOI : 10.1038/s43587-022-00309-6.

V-ATPase/TORC1-mediated ATFS-1 translation directs mitochondrial UPR activation in C. elegans

T. Y. Li; A. W. Gao; X. Li; H. Li; Y. J. Liu et al. 

Journal of Cell Biology. 2022. Vol. 222, num. 1. DOI : 10.1083/jcb.202205045.

COX7A2L genetic variants determine cardiorespiratory fitness in mice and human

G. Benegiamo; M. B. Sleiman; M. Wohlwend; S. Rodriguez-Lopez; L. J. E. Goeminne et al. 

Nature Metabolism. 2022. Vol. 4, num. 10, p. 1336 – 1351. DOI : 10.1038/s42255-022-00655-0.

Integrative systems analysis identifies genetic and dietary modulators of bile acid homeostasis

H. Li; A. Perino; Q. Huang; G. V. G. Von Alvensleben; A. Banaei-Esfahani et al. 

Cell Metabolism. 2022. Vol. 34, num. 10, p. 1594 – +. DOI : 10.1016/j.cmet.2022.08.015.

Non-genomic activation of the AKT-mTOR pathway by the mitochondrial stress response in thyroid cancer

W. K. L. Doolittle; S. Park; S. G. Lee; S. Jeong; G. Lee et al. 

Oncogene. 2022. DOI : 10.1038/s41388-022-02484-7.

The Slc25a47 locus is a novel determinant of hepatic mitochondrial function implicated in liver fibrosis

N. Bresciani; H. Demagny; V. Lemos; F. Pontanari; X. Li et al. 

Journal Of Hepatology. 2022. Vol. 77, num. 4, p. 1071 – 1082. DOI : 10.1016/j.jhep.2022.05.040.

Sex- and age-dependent genetics of longevity in a heterogeneous mouse population

M. Bou Sleiman; S. Roy; A. W. Gao; M. C. Sadler; G. V. G. von Alvensleben et al. 

Science. 2022. Vol. 377, num. 6614. DOI : 10.1126/science.abo3191.

Tetracycline-induced mitohormesis mediates disease tolerance against influenza

A. Mottis; T. Y. Li; G. El Alam; A. Rapin; E. Katsyuba et al. 

Journal Of Clinical Investigation. 2022. Vol. 132, num. 17, p. e151540. DOI : 10.1172/JCI151540.

Estrogen-related receptor gamma regulates mitochondrial and synaptic genes and modulates vulnerability to synucleinopathy

S. N. Fox; L. J. McMeekin; C. H. Savage; K. L. Joyce; S. M. Boas et al. 

Npj Parkinsons Disease. 2022. Vol. 8, num. 1, p. 106. DOI : 10.1038/s41531-022-00369-w.

Genetic background and sex control the outcome of high-fat diet feeding in mice

A. M. Bachmann; J-D. Morel; G. El Alam; S. Rodríguez-López; T. Imamura de lima et al. 

iScience. 2022. Vol. 25, num. 6, p. 104468. DOI : 10.1016/j.isci.2022.104468.

Urolithin A improves muscle strength, exercise performance, and biomarkers of mitochondrial health in a randomized trial in middle-aged adults

A. Singh; D. D’Amico; P. A. Andreux; A. M. Fouassier; W. Blanco-Bose et al. 

Cell Reports Medicine. 2022. Vol. 3, num. 5, p. 100633. DOI : 10.1016/j.xcrm.2022.100633.

Sirtuin 7 Deficiency Reduces Inflammation and Tubular Damage Induced by an Episode of Acute Kidney Injury

A. Sanchez-Navarro; M. A. Martinez-Rojas; A. Albarran-Godinez; R. Perez-Villalva; J. Auwerx et al. 

International Journal Of Molecular Sciences. 2022. Vol. 23, num. 5, p. 2573. DOI : 10.3390/ijms23052573.

Article Multi-omics analysis identifies essential regulators of mitochondrial stress response in two wild-type C. elegans strains

A. W. Gao; G. El Alam; A. Lalou; T. Y. Li; M. Molenaars et al. 

Iscience. 2022. Vol. 25, num. 2, p. 103734. DOI : 10.1016/j.isci.2022.103734.

The mouse metallomic landscape of aging and metabolism

J-D. Morel; L. Sauzeat; L. J. E. Goeminne; P. Jha; E. Williams et al. 

Nature Communications. 2022. Vol. 13, num. 1, p. 607. DOI : 10.1038/s41467-022-28060-x.

Inhibition of sphingolipid de novo synthesis counteracts muscular dystrophy

P-P. Laurila; P. Luan; M. Wohlwend; N. Zanou; B. Crisol et al. 

Science Advances. 2022. Vol. 8, num. 4. DOI : 10.1126/sciadv.abh4423.

eNAMPT actions through nucleus accumbens NAD + /SIRT1 link increased adiposity with sociability deficits programmed by peripuberty stress

L. Morató; S. Astori; I. Zalachoras; J. Rodrigues; S. Ghosal et al. 

Science Advances. 2022. Vol. 8, num. 9. DOI : 10.1126/sciadv.abj9109.

Conference Papers

ENHANCEMENT OF DE NOVO NAD plus BIOSYNTHESIS BY NOVEL ACMSD INHIBITORS IMPROVES MITOCHONDRIAL FUNCTION IN iPSC-DERIVED HUMAN LIVER ORGANOID MODELS OF STEATOHEPATITIS

Y. Liu; M. Kimura; A. Vijayakumar; E. Murakami; T. Takebe et al. 

2022.  p. S706 – S706.

Cyclo (His-Pro) Prevents Diet-Induced Fatty Liver Disease

A. De Masi; Xiaoxu Li; Qi Wang; A. Mottis; A. Rapin et al. 

2022.  p. S627 – S628.

The Genetic Background Shapes Disease Susceptibility And Reveals A Specific Role For Mitochondrial Dysfunction In The Progression From Nafld To Nash

G. Benegiamo; G. Von Alvensleben; Y. Liu; S. Rodriguez-Lopez; A. Bachmann et al. 

2022.  p. S633 – S634.

Reviews

Pleiotropic effects of mitochondria in aging

T. Lima; T. Y. Li; A. Mottis; J. Auwerx 

Nature Aging. 2022. Vol. 2, num. 3, p. 199 – 213. DOI : 10.1038/s43587-022-00191-2.

Theses

The role of nicotinamide riboside metabolism in pancreatic beta cells

A. S. Cercillieux / C. Canto Alvarez; J. Auwerx (Dir.)  

Lausanne, EPFL, 2022. 

Patents

Products and methods for promoting myogenesis

M. Wohlwend; J. Auwerx; U. Wisløff; J. B. Moreira 

EP4291653; WO2022171734; GB202101932.

2022.

2021

Journal Articles

Acute RyR1 Ca2+ leak enhances NADH-linked mitochondrial respiratory capacity

N. Zanou; H. Dridi; S. Reiken; T. I. de Lima; C. Donnelly et al. 

Nature Communications. 2021. Vol. 12, num. 1, p. 7219. DOI : 10.1038/s41467-021-27422-1.

The exercise-induced long noncoding RNA CYTOR promotes fast-twitch myogenesis in aging

M. Wohlwend; P-P. Laurila; K. William; M. Romani; T. Lima et al. 

Science Translational Medicine. 2021. Vol. 13, num. 623, p. eabc7367. DOI : 10.1126/scitranslmed.abc7367.

GCN5 maintains muscle integrity by acetylating YY1 to promote dystrophin expression

G. C. Addicks; H. Zhang; D. Ryu; G. Vasam; A. E. Green et al. 

Journal Of Cell Biology. 2021. Vol. 221, num. 2, p. e202104022. DOI : 10.1083/jcb.202104022.

Metabolic Rewiring by Loss of Sirt5 Promotes Kras-Induced Pancreatic Cancer Progression

T. Hu; S. K. Shukla; E. Vernucci; C. He; D. Wang et al. 

Gastroenterology. 2021. Vol. 161, num. 5, p. 1584 – 1600. DOI : 10.1053/j.gastro.2021.06.045.

Phalloidin Staining of Actin Filaments for Visualization of Muscle Fibers in Caenorhabditis elegans

M. Romani; J. Auwerx 

Bio-Protocol. 2021. Vol. 11, num. 19, p. e4183. DOI : 10.21769/BioProtoc.4183.

Gene-by-environment modulation of lifespan and weight gain in the murine BXD family

S. Roy; M. B. Sleiman; P. Jha; J. F. Ingels; C. J. Chapman et al. 

Nature Metabolism. 2021. Vol. 3, num. 9, p. 1217 – 1227. DOI : 10.1038/s42255-021-00449-w.

Direct supplementation with Urolithin A overcomes limitations of dietary exposure and gut microbiome variability in healthy adults to achieve consistent levels across the population

A. Singh; D. D’Amico; P. A. Andreux; G. Dunngalvin; T. Kern et al. 

European Journal Of Clinical Nutrition. 2021. Vol. 76, p. 297 – 308. DOI : 10.1038/s41430-021-00950-1.

Nicotinamide Riboside Enhances In Vitro Beta-adrenergic Brown Adipose Tissue Activity in Humans

E. B. M. Nascimento; M. P. B. Moonen; C. M. E. Remie; K. Gariani; J. A. Jorgensen et al. 

Journal Of Clinical Endocrinology & Metabolism. 2021. Vol. 106, num. 5, p. 1437 – 1447. DOI : 10.1210/clinem/dgaa960.

Urolithin A improves muscle function by inducing mitophagy in muscular dystrophy

P. Luan; D. D’Amico; P. A. Andreux; P-P. Laurila; M. Wohlwend et al. 

Science Translational Medicine. 2021. Vol. 13, num. 588, p. eabb0319. DOI : 10.1126/scitranslmed.abb0319.

SIRT7 modulates the stability and activity of the renal K-Cl cotransporter KCC4 through deacetylation

L. G. Noriega; Z. Melo; R. D. Rajaram; A. Mercado; A. R. Tovar et al. 

Embo Reports. 2021.  p. e50766. DOI : 10.15252/embr.202050766.

Differential roles of GDF15 and FGF21 in systemic metabolic adaptation to the mitochondrial integrated stress response

S. G. Kang; M. J. Choi; S-B. Jung; H. K. Chung; J. Y. Chang et al. 

Iscience. 2021. Vol. 24, num. 3, p. 102181. DOI : 10.1016/j.isci.2021.102181.

A platform for experimental precision medicine: The extended BXD mouse family

D. G. Ashbrook; D. Arends; P. Prins; M. K. Mulligan; S. Roy et al. 

Cell Systems. 2021. Vol. 12, num. 3, p. 235 – 247.e9. DOI : 10.1016/j.cels.2020.12.002.

TGR5 Regulates Macrophage Inflammation in Nonalcoholic Steatohepatitis by Modulating NLRP3 Inflammasome Activation

Y. Shi; W. Su; L. Zhang; C. Shi; J. Zhou et al. 

Frontiers In Immunology. 2021. Vol. 11, p. 609060. DOI : 10.3389/fimmu.2020.609060.

Pharmacological and genetic perturbation establish SIRT5 as a promising target in breast cancer

Y. L. N. Abril; I. R. Fernandez; J. Y. Hong; Y-L. Chiang; D. A. Kutateladze et al. 

Oncogene. 2021. Vol. 40, num. 9, p. 1644 – 1658. DOI : 10.1038/s41388-020-01637-w.

NAD+ boosting reduces age-associated amyloidosis and restores mitochondrial homeostasis in muscle

M. Romani; V. Sorrentino; C. Oh; H. Li; T. Imamura de Lima et al. 

Cell Reports. 2021. Vol. 34, num. 3, p. 108660. DOI : 10.1016/j.celrep.2020.108660.

TGR5/Cathepsin E signaling regulates macrophage innate immune activation in liver ischemia and reperfusion injury

H. Zhou; S. Zhou; Y. Shi; Q. Wang; S. Wei et al. 

American Journal Of Transplantation. 2021. Vol. 21, num. 4, p. 1453 – 1464. DOI : 10.1111/ajt.16327.

Pancreatic Sirtuin 3 Deficiency Promotes Hepatic Steatosis by Enhancing 5-Hydroxytryptamine Synthesis in Mice With Diet-Induced Obesity

X. Ming; A. C. K. Chung; D. Mao; H. Cao; B. Fan et al. 

Diabetes. 2021. Vol. 70, num. 1, p. 119 – 131. DOI : 10.2337/db20-0339.

Differential role of nicotinamide adenine dinucleotide deficiency in acute and chronic kidney disease

A. Faivre; E. Katsyuba; T. Verissimo; M. Lindenmeyer; R. D. Rajaram et al. 

Nephrology Dialysis Transplantation. 2021. Vol. 36, num. 1, p. 60 – 68. DOI : 10.1093/ndt/gfaa124.

Reviews

Impact of the Natural Compound Urolithin A on Health, Disease, and Aging

D. D’Amico; P. A. Andreux; P. Valdes; A. Singh; C. Rinsch et al. 

Trends In Molecular Medicine. 2021. Vol. 27, num. 7, p. 687 – 699. DOI : 10.1016/j.molmed.2021.04.009.

Theses

Enhancing mitochondrial quality control to fight neuromuscular degeneration in aging and disease

M. Romani / J. Auwerx (Dir.)  

Lausanne, EPFL, 2021. 

Genetic, metabolic, and molecular insights into the diverse outcomes of diet-induced obesity in mouse

A. M. Bachmann / J. Auwerx (Dir.)  

Lausanne, EPFL, 2021. 

Patents

Treatment and prevention of aging related-disease and/or aging by the inhibition of sphingolipids

P-P. Laurila; J. Auwerx 

US2022288004; EP4034645; CN114746547; AU2020353222; WO2021058497.

2021.

2020

Journal Articles

Enoxacin induces oxidative metabolism and mitigates obesity by regulating adipose tissue miRNA expression

A. L. Rocha; T. I. de Lima; G. P. de Souza; R. O. Correa; D. L. Ferrucci et al. 

Science Advances. 2020. Vol. 6, num. 49, p. eabc6250. DOI : 10.1126/sciadv.abc6250.

Inhibition of mitophagy drives macrophage activation and antibacterial defense during sepsis

D. Patoli; F. Mignotte; V. Deckert; A. Dusuel; A. Dumont et al. 

Journal Of Clinical Investigation. 2020. Vol. 130, num. 11, p. 5858 – 5874. DOI : 10.1172/JCI130996.

The Gene-Regulatory Footprint of Aging Highlights Conserved Central Regulators

M. B. Sleiman; P. Jha; R. Houtkooper; R. W. Williams; X. Wang et al. 

Cell Reports. 2020. Vol. 32, num. 13, p. 108203. DOI : 10.1016/j.celrep.2020.108203.

Asperuloside Improves Obesity and Type 2 Diabetes through Modulation of Gut Microbiota and Metabolic Signaling

A. Nakamura; Y. Yokoyama; K. Tanaka; G. Benegiamo; A. Hirayama et al. 

Iscience. 2020. Vol. 23, num. 9, p. 101522. DOI : 10.1016/j.isci.2020.101522.

TBK1 phosphorylates mutant Huntingtin and suppresses its aggregation and toxicity in Huntington’s disease models

R. N. Hegde; A. Chiki; L. Petricca; P. Martufi; N. Arbez et al. 

The EMBO Journal. 2020.  p. e104671. DOI : 10.15252/embj.2020104671.

Macrophage NCOR1 Deficiency Ameliorates Myocardial Infarction and Neointimal Hyperplasia in Mice

L-J. Du; J-Y. Sun; W-C. Zhang; Y-L. Wang; H. Zhu et al. 

Journal Of The American Heart Association. 2020. Vol. 9, num. 15, p. e015862. DOI : 10.1161/JAHA.120.015862.

PHD3 Loss Promotes Exercise Capacity and Fat Oxidation in Skeletal Muscle

H. Yoon; J. B. Spinelli; E. Zaganjor; S. J. Wong; N. J. German et al. 

Cell Metabolism. 2020. Vol. 32, num. 2, p. 215 – +. DOI : 10.1016/j.cmet.2020.06.017.

Eosinophils regulate adipose tissue inflammation and sustain physical and immunological fitness in old age

D. Brigger; C. Riether; R. van Brummelen; K. I. Mosher; A. Shiu et al. 

Nature Metabolism. 2020. Vol. 2, num. 8, p. 688 – 702. DOI : 10.1038/s42255-020-0228-3.

Nicotinamide riboside supplementation alters body composition and skeletal muscle acetylcarnitine concentrations in healthy obese humans

C. M. E. Remie; K. H. M. Roumans; M. P. B. Moonen; N. J. Connell; B. Havekes et al. 

American Journal Of Clinical Nutrition. 2020. Vol. 112, num. 2, p. 413 – 426. DOI : 10.1093/ajcn/nqaa072.

Growth differentiation factor 15 protects against the aging-mediated systemic inflammatory response in humans and mice

J. S. Moon; L. J. E. Goeminne; J. T. Kim; J. W. Tian; S-H. Kim et al. 

Aging Cell. 2020.  p. e13195. DOI : 10.1111/acel.13195.

Confounding factors from inducible systems for spatiotemporal gene expression regulation

R. C. I. Wuest; R. H. Houtkooper; J. Auwerx 

Journal Of Cell Biology. 2020. Vol. 219, num. 7, p. e202003031. DOI : 10.1083/jcb.202003031.

Gene replacement therapy provides benefit in an adult mouse model of Leigh syndrome

R. Reynaud-Dulaurier; G. Benegiamo; E. Marrocco; R. Al-Tannir; E. M. Surace et al. 

Brain. 2020. Vol. 143, num. 6, p. 1686 – 1696. DOI : 10.1093/brain/awaa105.

Skeletal muscle enhancer interactions identify genes controlling whole-body metabolism

K. Williams; L. R. Ingerslev; J. Bork-Jensen; M. Wohlwend; A. N. Hansen et al. 

Nature Communications. 2020. Vol. 11, num. 1, p. 2695. DOI : 10.1038/s41467-020-16537-6.

Evaluation of the NAD(+) biosynthetic pathway in ALS patients and effect of modulating NAD(+) levels in hSOD1-linked ALS mouse models

B. A. Harlan; K. M. Killoy; M. Pehar; L. Liu; J. Auwerx et al. 

Experimental Neurology. 2020. Vol. 327, p. 113219. DOI : 10.1016/j.expneurol.2020.113219.

Long noncoding RNA SNHG12 integrates a DNA-PK-mediated DNA damage response and vascular senescence

S. Haemmig; D. Yang; X. Sun; D. Das; S. Ghaffari et al. 

Science Translational Medicine. 2020. Vol. 12, num. 531, p. eaaw1868. DOI : 10.1126/scitranslmed.aaw1868.

Nicotinamide Pathway-Dependent Sirt1 Activation Restores Calcium Homeostasis to Achieve Neuroprotection in Spinocerebellar Ataxia Type 7

C. A. Stoyas; D. D. Bushart; P. M. Switonski; J. M. Ward; A. Alaghatta et al. 

Neuron. 2020. Vol. 105, num. 4, p. 630 – 644.e9. DOI : 10.1016/j.neuron.2019.11.019.

Mitochondrial Deacetylase Sirt3 Reduces Vascular Dysfunction and Hypertension While Sirt3 Depletion in Essential Hypertension Is Linked to Vascular Inflammation and Oxidative Stress

A. E. Dikalova; A. Pandey; L. Xiao; L. Arslanbaeva; T. Sidorova et al. 

Circulation Research. 2020. Vol. 126, num. 4, p. 439 – 452. DOI : 10.1161/CIRCRESAHA.119.315767.

Sirt6 deletion in bone marrow-derived cells increases atherosclerosis – Central role of macrophage scavenger receptor 1

T. Arsiwala; J. Pahla; L. J. van Tits; L. Bisceglie; D. S. Gaul et al. 

Journal Of Molecular And Cellular Cardiology. 2020. Vol. 139, p. 24 – 32. DOI : 10.1016/j.yjmcc.2020.01.002.

NCoR1 Protects Mice From Dextran Sodium Sulfate Induced Colitis by Guarding Colonic Crypt Cells From Luminal Insult

E. Mennillo; X. Yang; M. Paszek; J. Auwerx; C. Benner et al. 

Cellular And Molecular Gastroenterology And Hepatology. 2020. Vol. 10, num. 1, p. 133 – 147. DOI : 10.1016/j.jcmgh.2020.01.014.

Conference Papers

A conserved role of CBP/p300 in mitochondrial stress response and longevity

J. Auwerx; T. Li 

2020. Annual Meeting on Experimental Biology, San Diego, CA, Apr 04-07, 2020. DOI : 10.1096/fasebj.2020.34.s1.00128.

Reviews

Mouse Systems Genetics as a Prelude to Precision Medicine

H. Li; J. Auwerx 

Trends In Genetics. 2020. Vol. 36, num. 4, p. 259 – 272. DOI : 10.1016/j.tig.2020.01.004.

NAD(+) homeostasis in health and disease

E. Katsyuba; M. Romani; D. Hofer; J. Auwerx 

Nature Metabolism. 2020. Vol. 2, num. 1, p. 9 – 31. DOI : 10.1038/s42255-019-0161-5.

Theses

Metabolic rescue of muscle and muscle stem cells in muscle disease

P. Luan / J. Auwerx (Dir.)  

Lausanne, EPFL, 2020. 

2019

Journal Articles

The Detection of Early Epigenetic Inheritance of Mitochondrial Stress in C. Elegans with a Microfluidic Phenotyping Platform

H. B. Atakan; K. S. Hof; M. Cornaglia; J. Auwerx; M. A. M. Gijs 

Scientific Reports. 2019. Vol. 9, p. 19315. DOI : 10.1038/s41598-019-55979-x.

Mitochondrial haplotypes affect metabolic phenotypes in the Drosophila Genetic Reference Panel

R. P. J. Bevers; M. Litovchenko; A. Kapopoulou; V. S. Braman; M. R. Robinson et al. 

Nature Metabolism. 2019. Vol. 1, num. 12, p. 1226 – 1242. DOI : 10.1038/s42255-019-0147-3.

Identifying gene function and module connections by the integration of multispecies expression compendia

H. Li; D. Rukina; F. P. A. David; T. Y. Li; C-M. Oh et al. 

Genome Research. 2019. Vol. 29, num. 12, p. 2034 – 2045. DOI : 10.1101/gr.251983.119.

N-acetylaspartate availability is essential for juvenile survival on fat-free diet and determines metabolic health

D. C. Hofer; G. Zirkovits; H. J. Pelzmann; K. Huber; A. R. Pessentheiner et al. 

Faseb Journal. 2019. Vol. 33, num. 12, p. 13808 – 13824. DOI : 10.1096/fj.201801323R.

A biosensor for measuring NAD(+) levels at the point of care

Q. Yu; N. Pourmandi; L. Xue; C. Gondrand; S. Fabritz et al. 

Nature Metabolism. 2019. Vol. 1, num. 12, p. 1219 – 1225. DOI : 10.1038/s42255-019-0151-7.

Opposing action of NCoR1 and PGC-1 alpha in mitochondrial redox homeostasis

T. I. Lima; D. S. P. S. F. Guimaraes; A. G. Oliveira; H. Araujo; C. H. G. Sponton et al. 

Free Radical Biology And Medicine. 2019. Vol. 143, p. 203 – 208. DOI : 10.1016/j.freeradbiomed.2019.08.006.

Diet modulates cecum bacterial diversity and physiological phenotypes across the BXD mouse genetic reference population

M. E. Perez-Munoz; A. M. McKnite; E. G. Williams; J. Auwerx; R. W. Williams et al. 

Plos One. 2019. Vol. 14, num. 10, p. e0224100. DOI : 10.1371/journal.pone.0224100.

Automated Platform for Long-Term Culture and High-Content Phenotyping of Single C. elegans Worms

H. B. Atakan; R. Xiang; M. Cornaglia; L. Mouchiroud; E. Katsyuba et al. 

Scientific Reports. 2019. Vol. 9, p. 14340. DOI : 10.1038/s41598-019-50920-8.

Nuclear receptor corepressor 1 represses cardiac hypertrophy

C. Li; X-N. Sun; B-Y. Chen; M-R. Zeng; L-J. Du et al. 

EMBO Molecular Medicine. 2019.  p. e9127. DOI : 10.15252/emmm.201809127.

The gut microbiota influences skeletal muscle mass and function in mice

S. Lahiri; H. Kim; I. Garcia-Perez; M. M. Reza; K. A. Martin et al. 

Science Translational Medicine. 2019. Vol. 11, num. 502, p. eaan5662. DOI : 10.1126/scitranslmed.aan5662.

Cross-species functional modules link proteostasis to human normal aging

A. Komljenovic; H. Li; V. Sorrentino; Z. Kutalik; J. Auwerx et al. 

Plos Computational Biology. 2019. Vol. 15, num. 7, p. e1007162. DOI : 10.1371/journal.pcbi.1007162.

The mitophagy activator urolithin A is safe and induces a molecular signature of improved mitochondrial and cellular health in humans

P. A. Andreux; W. Blanco-Bose; D. Ryu; F. Burdet; M. Ibberson et al. 

Nature Metabolism. 2019. Vol. 1, num. 6, p. 595 – 603. DOI : 10.1038/s42255-019-0073-4.

MicroRNA-382 silencing induces a mitonuclear protein imbalance and activates the mitochondrial unfolded protein response in muscle cells

D. Dahlmans; A. Houzelle; P. Andreux; X. Wang; J. A. Jorgensen et al. 

Journal Of Cellular Physiology. 2019. Vol. 234, num. 5, p. 6601 – 6610. DOI : 10.1002/jcp.27401.

Autophagy regulates lipid metabolism through selective turnover of NCoR1

T. Saito; A. Kuma; Y. Sugiura; Y. Ichimura; M. Obata et al. 

Nature Communications. 2019. Vol. 10, p. 1567. DOI : 10.1038/s41467-019-08829-3.

Niacin: an old lipid drug in a new NAD(+) dress

M. Romani; D. C. Hofer; E. Katsyuba; J. Auwerx 

Journal Of Lipid Research. 2019. Vol. 60, num. 4, p. 741 – 746. DOI : 10.1194/jlr.S092007.

Mild inborn errors of metabolism in commonly used inbred mouse strains

J. Leandro; S. Violante; C. A. Argmann; J. Hagen; T. Dodatko et al. 

Molecular Genetics And Metabolism. 2019. Vol. 126, num. 4, p. 388 – 396. DOI : 10.1016/j.ymgme.2019.01.021.

The NAD-Booster Nicotinamide Riboside Potently Stimulates Hematopoiesis through Increased Mitochondrial Clearance

N. Vannini; V. Campos; M. Girotra; V. Trachsel; S. Rojas-Sutterlin et al. 

Cell Stem Cell. 2019. Vol. 24, num. 3, p. 405 – 418.e7. DOI : 10.1016/j.stem.2019.02.012.

The nuclear receptor corepressor NCoR1 regulates hematopoiesis and leukemogenesis in vivo

X. Wan; L. Liu; P. Zhou; X. Hui; Q. He et al. 

Blood Advances. 2019. Vol. 3, num. 4, p. 644 – 657. DOI : 10.1182/bloodadvances.2018022756.

The RNA-Binding Protein PUM2 Impairs Mitochondrial Dynamics and Mitophagy During Aging

D. D’Amico; A. Mottis; F. Potenza; V. Sorrentino; H. Li et al. 

Molecular Cell. 2019. Vol. 73, num. 4, p. 775 – 787.e10. DOI : 10.1016/j.molcel.2018.11.034.

Multimodal imaging and high-throughput image-processing for drug screening on living organisms on-chip

D. Migliozzi; M. Cornaglia; L. Mouchiroud; V. Uhlmann; M. A. Unser et al. 

Journal of Biomedical Optics. 2019. Vol. 24, num. 2, p. 021205. DOI : 10.1117/1.JBO.24.2.021205.

Automated high-content phenotyping from the first larval stage till the onset of adulthood of the nematode Caenorhabditis elegans

H. B. Atakan; M. Cornaglia; L. Mouchiroud; J. Auwerx; M. A. M. Gijs 

Lab On A Chip. 2019. Vol. 19, num. 1, p. 120 – 135. DOI : 10.1039/c8lc00863a.

Conference Papers

Regulation of NAD plus biosynthesis pathway in chronic kidney disease

A. Faivre; A. Mottis; R. D. Rajaram; D. Legouis; M. Lindenmeyer et al. 

2019. 51st Annual meeting Swiss Society of Nephrology, Interlaken, Switzerland, 04 .- 06.12.2019. p. 4S – 4S.

Inhibition of Mitophagy Triggers Classical Activation of Macrophages

D. Patoli; V. Deckert; A. Rieu; A. Dusuel; A. Jalil et al. 

2019. 87th Congress of the European-Atherosclerosis-Society (EAS), Maastricht, Netherlands, May 26-29, 2019. p. E26 – E26. DOI : 10.1016/j.atherosclerosis.2019.06.075.

Automated High-Content Phenotyping Of The Nematode C. Elegans At Single Animal Resolution With A Microfluidic Platform

H. B. Atakan; R. Xiang; M. Cornaglia; L. Mouchiroud; J. Auwerx et al. 

2019. 20th International Conference on Solid-State Sensors, Actuators and Microsystems and Eurosensors XXXIII (TRANSDUCERS and EUROSENSORS), Berlin, GERMANY, Jun 23-27, 2019. p. 2209 – 2212. DOI : 10.1109/TRANSDUCERS.2019.8808300.

Reviews

Mitocellular communication: Shaping health and disease

A. Mottis; S. Herzig; J. Auwerx 

Science. 2019. Vol. 366, num. 6467, p. 827 – 832. DOI : 10.1126/science.aax3768.

The virtuous cycle of human genetics and mouse models in drug discovery

J. H. Nadeau; J. Auwerx 

Nature Reviews Drug Discovery. 2019. Vol. 18, num. 4, p. 255 – 272. DOI : 10.1038/s41573-018-0009-9.

Theses

Systems genetics approaches to probe gene function

H. Li / J. Auwerx (Dir.)  

Lausanne, EPFL, 2019. 

Patents

Methods of treating or preventing an aging-related disease

D. D’Amico; J. Auwerx 

WO2019229133; EP3575401.

2019.

2018

Journal Articles

De novo NAD(+) synthesis enhances mitochondrial function and improves health

E. Katsyuba; A. Mottis; M. Zietak; F. De Franco; V. van der Velpen et al. 

Nature. 2018. Vol. 563, num. 7731, p. 354 – 359. DOI : 10.1038/s41586-018-0645-6.

Quantifying and Localizing the Mitochondrial Proteome Across Five Tissues in A Mouse Population

E. G. Williams; Y. Wu; W. Wolski; J. Y. Kim; J. Lan et al. 

Molecular & Cellular Proteomics. 2018. Vol. 17, num. 9, p. 1766 – 1777. DOI : 10.1074/mcp.RA118.000554.

Oxidative stress and mitochondrial dynamics malfunction are linked in Pelizaeus-Merzbacher disease

M. Ruiz; M. Begou; N. Launay; P. Ranea-Robles; P. Bianchi et al. 

Brain Pathology. 2018. Vol. 28, num. 5, p. 611 – 30. DOI : 10.1111/bpa.12571.

An Integrated Systems Genetics and Omics Toolkit to Probe Gene Function

H. Li; X. Wang; D. Rukina; Q. Huang; T. Lin et al. 

Cell Systems. 2018. Vol. 6, num. 1, p. 90 – 102. DOI : 10.1016/j.cels.2017.10.016.

Conference Papers

A microfluidic array for high-content screening at whole-organism resolution

D. Migliozzi; M. Cornaglia; L. Mouchiroud; J. Auwerx; M. A. M. Gijs 

2018. Conference on Microfluidics, BioMEMS, and Medical Microsystems XVI, San Francisco, CA, Jan 27-29, 2018. DOI : 10.1117/12.2285025.

Theses

Mitochondrial stress signalling and its impacts on physiology

A. J. L. Mottis / J. Auwerx (Dir.)  

Lausanne, EPFL, 2018. 

Patents

Plasma and liver lipid species as biomarkers of fatty liver

P. Jha; J. Auwerx 

US2020096524; WO2018141965; WO2018141965.

2018.

Methods of treating amyloid-beta peptide diseases

J. Auwerx; V. Sorrentino; L. Mouchiroud 

US2022110902; US2019358184; WO2018108991; WO2018108991.

2018.

2017

Journal Articles

PPAR delta Promotes Running Endurance by Preserving Glucose

W. Fan; W. Waizenegger; C. S. Lin; V. Sorrentino; M-X. He et al. 

Cell Metabolism. 2017. Vol. 25, num. 5, p. 1186 – 1193. DOI : 10.1016/j.cmet.2017.04.006.

A multiscale study of the role of dynamin in the regulation of glucose uptake

R. Trouillon; M. C. Letizia; K. J. Menzies; L. Mouchiroud; J. Auwerx et al. 

Integrative Biology. 2017. Vol. 9, num. 10, p. 810 – 819. DOI : 10.1039/c7ib00015d.

Deguelin exerts potent nematocidal activity via the mitochondrial respiratory chain

S. Preston; P. K. Korhonen; L. Mouchiroud; M. Cornaglia; S. L. Mcgee et al. 

Faseb Journal. 2017. Vol. 31, num. 10, p. 4515 – 4532. DOI : 10.1096/fj.201700288R.

Growth differentiation factor 15 is a myomitokine governing systemic energy homeostasis

H. K. Chung; D. Ryu; K. S. Kim; J. Y. Chang; Y. K. Kim et al. 

Journal Of Cell Biology. 2017. Vol. 216, num. 1, p. 149 – 165. DOI : 10.1083/jcb.201607110.

Plasma Membrane-bound G Protein-coupled Bile Acid Receptor Attenuates Liver Ischemia/Reperfusion Injury Via the Inhibition of Toll-like Receptor 4 Signaling in Mice

H. Yang; H. Zhou; L. Zhuang; J. Auwerx; K. Schoonjans et al. 

Liver Transplantation. 2017. Vol. 23, num. 1, p. 63 – 74. DOI : 10.1002/lt.24628.

Intestinal NCoR1, a regulator of epithelial cell maturation, controls neonatal hyperbilirubinemia

S. Chen; W. Lu; M-F. Yueh; E. Rettenmeier; M. Liu et al. 

Proceedings Of The National Academy Of Sciences Of The United States Of America. 2017. Vol. 114, num. 8, p. E1432 – E1440. DOI : 10.1073/pnas.1700232114.

Systems Phytohormone Responses to Mitochondrial Proteotoxic Stress

X. Wang; J. Auwerx 

Molecular Cell. 2017. Vol. 68, num. 3, p. 540 – +. DOI : 10.1016/j.molcel.2017.10.006.

An unbiased silencing screen in muscle cells identifies miR-320a, miR-150, miR-196b, and miR-34c as regulators of skeletal muscle mitochondria! metabolism

D. Dahlmans; A. Houzelle; P. Andreux; J. A. Jorgensen; X. Wang et al. 

Molecular Metabolism. 2017. Vol. 6, num. 11, p. 1429 – 1442. DOI : 10.10161/j.molmet.2017.08.007.

Degradation of PHLPP2 by KCTD17, via a Glucagon-Dependent Pathway, Promotes Hepatic Steatosis

K. Kim; D. Ryu; P. Dongiovanni; L. Ozcan; S. Nayak et al. 

Gastroenterology. 2017. Vol. 153, num. 6, p. 1568 – 1580.e10. DOI : 10.1053/j.gastro.2017.08.039.

Enhancing mitochondrial proteostasis reduces amyloid-beta proteotoxicity

V. Sorrentino; M. Romani; L. M. Ouchiroud; J. S. Beck; H. Zhang et al. 

Nature. 2017. Vol. 552, num. 7684, p. 187 – 193. DOI : 10.1038/nature25143.

Sirtuin 3 deficiency does not alter host defenses against bacterial and fungal infections

E. Ciarlo; T. Heinonen; J. Lugrin; H. Acha-Orbea; D. Le Roy et al. 

Scientific Reports. 2017. Vol. 7, p. 3853. DOI : 10.1038/s41598-017-04263-x.

Conference Papers

A microfluidic platform for automated phenotyping during full lifespan of Caenorhabditis elegans at high-throughput

H. B. Atakan; M. Cornaglia; L. Mouchiroud; J. Auwerx; M. Gijs 

2017. The 21st International Conference on Miniaturized Systems for Chemistry and Life Sciences, Savannah, Georgia, USA, October 22-26, 2017.

Chromatin remodeling factor integrates responses against nuclear and mitochondrial stress

O. Matilainen; P. M. Quiros; J. Auwerx 

2017. 42nd Congress of the Federation-of-European-Biochemical-Societies (FEBS) on From Molecules to Cells and Back, Jerusalem, ISRAEL, SEP 10-14, 2017. p. 26 – 26.

Reviews

Cytosolic Proteostasis Networks of the Mitochondrial Stress Response

D. D’Amico; V. Sorrentino; J. Auwerx 

Trends In Biochemical Sciences. 2017. Vol. 42, num. 9, p. 712 – 725. DOI : 10.1016/j.tibs.2017.05.002.

Patents

Agents and methods using thereof for the prevention and treatment of stem cell muscle disorders

H. Zhang; K. Menzies; J. Auwerx; D. Ryu 

US2021137959; US10905704; US2018360862; EP3347024; WO2017042198; WO2017042198.

2017.

Datasets

The effects of mitochondrial- and histone stress on the C. elegans transcriptome

O. J. Matilainen; M. Bou Sleiman; P. Moral Quiros; S. M. D. A. Garcia; J. Auwerx 

2017.