Evolution of cooperation in deme-structured populations on graphs

A. Moawad; A. Abbara; A-F. Bitbol 

Universal Casimir attraction between filaments at the cell scale

B. Spreng; H. Berthoumieux; A. Lambrecht; A-F. Bitbol; P. Maia Neto et al. 

Impact of spatial structure and finite size on the evolution and ecology of asexual microbial populations

Impact of phylogeny on inference from protein sequences: from models to natural data

Interactions between pili affect the outcome of bacterial competition driven by the type VI secretion system

S. B. Otto; R. M. Servajean; A. Lemopoulos; A-F. Bitbol; M. Blokesch 

Frequent asymmetric migrations suppress natural selection in spatially structured populations

A. Abbara; A-F. Bitbol 

Impact of population size on early adaptation in rugged fitness landscapes

R. Servajean; A-F. Bitbol 

Combining phylogeny and coevolution improves the inference of interaction partners among paralogous proteins

C. Gandarilla-Perez; S. Pinilla; A-F. Bitbol; M. Weigt 

Impact of phylogeny on structural contact inference from protein sequence data

N. Dietler; U. Lupo; A-F. Bitbol 

Generative power of a protein language model trained on multiple sequence alignments

D. Sgarbossa; U. Lupo; A-F. Bitbol 

Interactions between pili affect the outcome of bacterial competition driven by the type VI secretion system

S. B. Otto; R. M. Servajean; A. Lemopoulos; A-F. Bitbol; M. Blokesch 

Protein language models trained on multiple sequence alignments learn phylogenetic relationships

U. Lupo; D. Sgarbossa; A-F. Bitbol 

Correlations from structure and phylogeny combine constructively in the inference of protein partners from sequences

A. Gerardos; N. Dietler; A-F. Bitbol 

Extracting phylogenetic dimensions of coevolution reveals hidden functional signals

A. Colavin; E. Atolia; A-F. Bitbol; K. C. Huang 

Hydrodynamic flow and concentration gradients in the gut enhance neutral bacterial diversity

D. Labavić; C. Loverdo; A-F. Bitbol 

Toward a Universal Model for Spatially Structured Populations

L. Marrec; I. Lamberti; A-F. Bitbol 

Evolutionary history expands the range of signaling interactions in hybrid multikinase networks

P. Ortet; S. Fochesato; A-F. Bitbol; D. E. Whitworth; D. Lalaouna et al. 

A convolutional neural network segments yeast microscopy images with high accuracy

N. Dietler; M. Minder; V. Gligorovski; A. M. Economou; D. A. H. L. Joly et al. 

Adapt or Perish: Evolutionary Rescue in a Gradually Deteriorating Environment

L. Marrec; A-F. Bitbol 

Resist or perish: Fate of a microbial population subjected to a periodic presence of antimicrobial

L. Marrec; A-F. Bitbol 

Statistical physics of interacting proteins: Impact of dataset size and quality assessed in synthetic sequences

C. A. Gandarilla-Pérez; P. Mergny; M. Weigt; A-F. Bitbol 

Spatiotemporal pattern formation in E. coli biofilms explained by a simple physical energy balance

P. Thomen; J. D. P. Valentin; A-F. Bitbol; N. Henry 

Phylogenetic correlations can suffice to infer protein partners from sequences

G. Marmier; M. Weigt; A-F. Bitbol 

Antibody‐mediated crosslinking of gut bacteria hinders the spread of antibiotic resistance

F. Bansept; L. Marrec; A-F. Bitbol; C. Loverdo 

Revealing evolutionary constraints on proteins through sequence analysis

S-W. Wang; A-F. Bitbol; N. S. Wingreen 

Inferring interaction partners from protein sequences using mutual information

A-F. Bitbol 

Quantifying the impact of a periodic presence of antimicrobial on resistance evolution in a homogeneous microbial population of fixed size

L. Marrec; A-F. Bitbol 

pH sensing by lipids in membranes: The fundamentals of pH-driven migration, polarization and deformations of lipid bilayer assemblies

M. I. Angelova; A-F. Bitbol; M. Seigneuret; G. Staneva; A. Kodama et al. 

Membrane-Mediated Interactions

P. Bassereau; P. Sens; A-F. Bitbol; D. Constantin; J-B. Fournier 

Bacterial biofilm under flow: First a physical struggle to stay, then a matter of breathing

P. Thomen; J. Robert; A. Monmeyran; A-F. Bitbol; C. Douarche et al. 

Inferring interaction partners from protein sequences

A-F. Bitbol; R. S. Dwyer; L. J. Colwell; N. S. Wingreen 

Characterizing the Statistical Properties of Protein Surfaces

J. H. Bak; A-F. Bitbol; W. Bialek 

Fundamental Constraints on the Abundances of Chemotaxis Proteins

A-F. Bitbol; N. Wingreen 

Direct Monolayer Packing Imbalance and Phospholipid Flip-Flop: Two Mechanisms of Local Bilayer Deformation. Application to Mitochondrial Cristae of Wild-Type and Cardiolipin-Deficient Mutant

N. Khalifat; M. Rahimi; A-F. Bitbol; M. Seigneuret; J-B. Fournier et al. 

Fundamental Constraints on the Abundances of Chemotaxis Proteins

A-F. Bitbol; N. S. Wingreen 

Quantifying the Role of Population Subdivision in Evolution on Rugged Fitness Landscapes

A-F. Bitbol; D. J. Schwab 

Interplay of Packing and Flip-flop in Local Bilayer Deformation. How Phosphatidylglycerol Could Rescue Mitochondrial Function in a Cardiolipin-deficient Yeast Mutant

N. Khalifat; M. Rahimi; A-F. Bitbol; M. Seigneuret; J-B. Fournier et al. 

Large-scale filament formation inhibits the activity of CTP synthetase

R. M. Barry; A-F. Bitbol; A. Lorestani; E. J. Charles; C. H. Habrian et al. 

Pairwise summation approximation for Casimir potentials and its limitations

A-F. Bitbol; A. Canaguier-Durand; A. Lambrecht; S. Reynaud 

Membrane properties revealed by spatiotemporal response to a local inhomogeneity

A-F. Bitbol; J-B. Fournier 

Elasticity of Lipid Bilayer Membranes at the Nanoscale: The Need for New Terms

A-F. Bitbol; D. Constantin; J-B. Fournier 

Bilayer Elasticity at the Nanoscale: The Need for New Terms

A-F. Bitbol; D. Constantin; J-B. Fournier 

Fluctuations of the Casimir-like force between two inclusions in a biological membrane

A-F. Bitbol; J-B. Fournier 

Lipid Membrane Deformation in Response to a Local pH Modification

A-F. Bitbol; N. Puff; Y. Sakuma; M. Imai; J-B. Fournier et al. 

Lipid membrane deformation in response to a local pH modification: theory and experiments

A-F. Bitbol; N. Puff; Y. Sakuma; M. Imai; J-B. Fournier et al. 

Universal amplitudes of the Casimir-like interactions between four types of rods in fluid membranes

A-F. Bitbol; K. Sin Ronia; J-B. Fournier 

Dynamical membrane curvature instability controlled by intermonolayer friction

A-F. Bitbol; J-B. Fournier; M. I. Angelova; N. Puff 

Forces exerted by a correlated fluid on embedded inclusions

A-F. Bitbol; J-B. Fournier 

Membrane stress tensor in the presence of lipid density and composition inhomogeneities

A-F. Bitbol; L. Peliti; J. -B. Fournier 

Fluctuations of the Casimir-like force between two membrane inclusions

A-F. Bitbol; P. G. Dommersnes; J-B. Fournier 

Scaling and dynamics of washboard roads

A-F. Bitbol; N. Taberlet; S. W. Morris; J. N. McElwaine