Evolution of cooperation in deme-structured populations on graphs

A. Moawad; A. Abbara; A-F. Bitbol 

Universal Casimir attraction between filaments at the cell scale

B. Spreng; H. Berthoumieux; A. Lambrecht; A-F. Bitbol; P. Maia Neto et al. 

Impact of phylogeny on inference from protein sequences: from models to natural data

Impact of spatial structure and finite size on the evolution and ecology of asexual microbial populations

Interactions between pili affect the outcome of bacterial competition driven by the type VI secretion system

S. B. Otto; R. M. Servajean; A. Lemopoulos; A-F. Bitbol; M. Blokesch 

Frequent asymmetric migrations suppress natural selection in spatially structured populations

A. Abbara; A-F. Bitbol 

Impact of population size on early adaptation in rugged fitness landscapes

R. Servajean; A-F. Bitbol 

Combining phylogeny and coevolution improves the inference of interaction partners among paralogous proteins

C. Gandarilla-Perez; S. Pinilla; A-F. Bitbol; M. Weigt 

Impact of phylogeny on structural contact inference from protein sequence data

N. Dietler; U. Lupo; A-F. Bitbol 

Generative power of a protein language model trained on multiple sequence alignments

D. Sgarbossa; U. Lupo; A-F. Bitbol 

Interactions between pili affect the outcome of bacterial competition driven by the type VI secretion system

S. B. Otto; R. M. Servajean; A. Lemopoulos; A-F. Bitbol; M. Blokesch 

Protein language models trained on multiple sequence alignments learn phylogenetic relationships

U. Lupo; D. Sgarbossa; A-F. Bitbol 

Correlations from structure and phylogeny combine constructively in the inference of protein partners from sequences

A. Gerardos; N. Dietler; A-F. Bitbol 

Extracting phylogenetic dimensions of coevolution reveals hidden functional signals

A. Colavin; E. Atolia; A-F. Bitbol; K. C. Huang 

Hydrodynamic flow and concentration gradients in the gut enhance neutral bacterial diversity

D. Labavić; C. Loverdo; A-F. Bitbol 

Toward a Universal Model for Spatially Structured Populations

L. Marrec; I. Lamberti; A-F. Bitbol 

Evolutionary history expands the range of signaling interactions in hybrid multikinase networks

P. Ortet; S. Fochesato; A-F. Bitbol; D. E. Whitworth; D. Lalaouna et al. 

A convolutional neural network segments yeast microscopy images with high accuracy

N. Dietler; M. Minder; V. Gligorovski; A. M. Economou; D. A. H. L. Joly et al. 

Adapt or Perish: Evolutionary Rescue in a Gradually Deteriorating Environment

L. Marrec; A-F. Bitbol 

Resist or perish: Fate of a microbial population subjected to a periodic presence of antimicrobial

L. Marrec; A-F. Bitbol 

Statistical physics of interacting proteins: Impact of dataset size and quality assessed in synthetic sequences

C. A. Gandarilla-Pérez; P. Mergny; M. Weigt; A-F. Bitbol 

Spatiotemporal pattern formation in E. coli biofilms explained by a simple physical energy balance

P. Thomen; J. D. P. Valentin; A-F. Bitbol; N. Henry 

Phylogenetic correlations can suffice to infer protein partners from sequences

G. Marmier; M. Weigt; A-F. Bitbol 

Antibody‐mediated crosslinking of gut bacteria hinders the spread of antibiotic resistance

F. Bansept; L. Marrec; A-F. Bitbol; C. Loverdo 

Revealing evolutionary constraints on proteins through sequence analysis

S-W. Wang; A-F. Bitbol; N. S. Wingreen 

Inferring interaction partners from protein sequences using mutual information

A-F. Bitbol 

Quantifying the impact of a periodic presence of antimicrobial on resistance evolution in a homogeneous microbial population of fixed size

L. Marrec; A-F. Bitbol 

pH sensing by lipids in membranes: The fundamentals of pH-driven migration, polarization and deformations of lipid bilayer assemblies

M. I. Angelova; A-F. Bitbol; M. Seigneuret; G. Staneva; A. Kodama et al. 

Membrane-Mediated Interactions

P. Bassereau; P. Sens; A-F. Bitbol; D. Constantin; J-B. Fournier 

Bacterial biofilm under flow: First a physical struggle to stay, then a matter of breathing

P. Thomen; J. Robert; A. Monmeyran; A-F. Bitbol; C. Douarche et al. 

Inferring interaction partners from protein sequences

A-F. Bitbol; R. S. Dwyer; L. J. Colwell; N. S. Wingreen 

Characterizing the Statistical Properties of Protein Surfaces

J. H. Bak; A-F. Bitbol; W. Bialek 

Fundamental Constraints on the Abundances of Chemotaxis Proteins

A-F. Bitbol; N. Wingreen 

Fundamental Constraints on the Abundances of Chemotaxis Proteins

A-F. Bitbol; N. S. Wingreen 

Direct Monolayer Packing Imbalance and Phospholipid Flip-Flop: Two Mechanisms of Local Bilayer Deformation. Application to Mitochondrial Cristae of Wild-Type and Cardiolipin-Deficient Mutant

N. Khalifat; M. Rahimi; A-F. Bitbol; M. Seigneuret; J-B. Fournier et al. 

Quantifying the Role of Population Subdivision in Evolution on Rugged Fitness Landscapes

A-F. Bitbol; D. J. Schwab 

Interplay of Packing and Flip-flop in Local Bilayer Deformation. How Phosphatidylglycerol Could Rescue Mitochondrial Function in a Cardiolipin-deficient Yeast Mutant

N. Khalifat; M. Rahimi; A-F. Bitbol; M. Seigneuret; J-B. Fournier et al. 

Large-scale filament formation inhibits the activity of CTP synthetase

R. M. Barry; A-F. Bitbol; A. Lorestani; E. J. Charles; C. H. Habrian et al. 

Pairwise summation approximation for Casimir potentials and its limitations

A-F. Bitbol; A. Canaguier-Durand; A. Lambrecht; S. Reynaud 

Elasticity of Lipid Bilayer Membranes at the Nanoscale: The Need for New Terms

A-F. Bitbol; D. Constantin; J-B. Fournier 

Membrane properties revealed by spatiotemporal response to a local inhomogeneity

A-F. Bitbol; J-B. Fournier 

Bilayer Elasticity at the Nanoscale: The Need for New Terms

A-F. Bitbol; D. Constantin; J-B. Fournier 

Lipid Membrane Deformation in Response to a Local pH Modification

A-F. Bitbol; N. Puff; Y. Sakuma; M. Imai; J-B. Fournier et al. 

Lipid membrane deformation in response to a local pH modification: theory and experiments

A-F. Bitbol; N. Puff; Y. Sakuma; M. Imai; J-B. Fournier et al. 

Fluctuations of the Casimir-like force between two inclusions in a biological membrane

A-F. Bitbol; J-B. Fournier 

Universal amplitudes of the Casimir-like interactions between four types of rods in fluid membranes

A-F. Bitbol; K. Sin Ronia; J-B. Fournier 

Dynamical membrane curvature instability controlled by intermonolayer friction

A-F. Bitbol; J-B. Fournier; M. I. Angelova; N. Puff 

Forces exerted by a correlated fluid on embedded inclusions

A-F. Bitbol; J-B. Fournier 

Membrane stress tensor in the presence of lipid density and composition inhomogeneities

A-F. Bitbol; L. Peliti; J. -B. Fournier 

Fluctuations of the Casimir-like force between two membrane inclusions

A-F. Bitbol; P. G. Dommersnes; J-B. Fournier 

Scaling and dynamics of washboard roads

A-F. Bitbol; N. Taberlet; S. W. Morris; J. N. McElwaine