Human Genome Database
Draft Human Genome @ NCBI
Draft Human Genome @ UCSC
Ensembl – automatic annotation of Eukaryotic genes
GDB – Genome Database
GeneCards – human genes, proteins and related diseases
Mammalian Gene Collection – offers full length sequences and DNA clones for HUMAN AND MOUSE
International Nucleotide Sequence Databases
DDBJ – DNA Data Bank of Japan
EBI – European Bioinformatics Institute
NCBI – National Center for Biotechnology Information
Other Organism
Berkeley Drosophila Genome Project
DictyBase – Dictyostelium discoideum
EcoGene – E. coli
FlyBase
Fruit Fly
Genomes OnLine Database,
information on complete and ongoing genome projects
HIV sequence database
Mouse
Mouse Genome Informatics
Saccharomyces Genome Database
The Arabidopsis Information Resource
The Proteome Databases – yeast, worm, & human, good annotation
TIGR Comprehensive Microbial Resource
TIGR Microbial Database
WormBase – C. elegans
Searching and Tools – Genomics Sequence Alignment
Bioccelerator @ EMBL – database searches using Smith-Waterman’s algorithm
BLAST @ NCBI – basic local alignment tool
FASTA @ EBI – sequence similarity and homology searching using FASTA
PSI-BLAST @ NCBI – Protein blast
Databases of Gene Regulation and Cell Signaling
Bodymap – human and mouse gene expression datab
ExpressDB – database containing yeast and E. coli expression data
HuGE – human gene expression index
Stanford Microarray Database – database of microarray experiments
Gene Regulation
Cister – cis-element cluster finder
DBTSS – database of transcriptional start sites
DCPD – Drosophila Core Promoter Database
DPInteract – DNA protein binding sites within E. coli DNA
EPD – eukaryotic promoter database