Samβada is an integrated software for landscape genomic analysis of large datasets. The key features are the study of local adaptation in relationship with environment and the measure of spatial autocorrelation in environmental and molecular datasets.
Releases
Samβada is available on GitHub
https://github.com/Sylvie/sambada
The latest release is 
https://github.com/Sylvie/sambada/releases
R.Samβada
R.Samβada is available on GitHub
https://github.com/SolangeD/R.SamBada
References
- Duruz, S., Sevane, N., Selmoni, O., Vajana, E., Leempoel, K., Stucki, S., Orozco-terWengel, P., Rochat, E., Dunner, S., The NEXTGEN Consortium, The CLIMGEN Consortium, Bruford, M.W., Joost, S., 2019. Rapid identification and interpretation of gene-environment associations using the new R.SamBada landscape genomics pipeline. Molecular Ecology Resources (online early).
- Stucki, S., Orozco-terWengel, P., Forester, B. R., Duruz, S., Colli, L., Masembe, C., … Joost, S. (2017). High performance computation of landscape genomic models including local indicators of spatial association. Molecular Ecology Resources, 17(5), 1072–1089. doi:10.1111/1755-0998.12629
- Stucki, S. (2014) Développement d’outils de géo-calcul haute performance pour l’identification de régions du génome potentiellement soumises à la sélection naturelle: analyse spatiale de la diversité de panels de polymorphismes nucléotidiques à haute densité (800k) chez Bos taurus et B. indicus en Ouganda, EPFL PhD Thesis no 6014, doi:10.5075/epfl-thesis-6014
Old version
Samβada 0.5.3
Documentation
Software
- Sambada v0.5.3 for MacOS
- Sambada v0.5.3 for Ubuntu
- Sambada v0.5.3 for Windows 32 bits
- Sambada v0.5.3 for Windows 64 bits
Source code
- sambada-v0.5.3-src.zip source code as .zip file
- sambada-v0.5.3-src.tar.gz source code as .tar.gz file