Recent Publications

Recent Journal Papers

Generative machine learning produces kinetic models that accurately characterize intracellular metabolic states

S. Choudhury; B. Narayanan; M. Moret; V. Hatzimanikatis; L. Miskovic 

Nature Catalysis. 2024. Vol. 7, num. 10, p. 1086 – 1098. DOI : 10.1038/s41929-024-01220-6.

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Rational strain design with minimal phenotype perturbation

B. Narayanan; D. R. Weilandt; M. Masid; L. Miskovic; V. Hatzimanikatis 

Nature Communications. 2024. Vol. 15, num. 1, p. 723. DOI : 10.1038/s41467-024-44831-0.

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From microbiome composition to functional engineering, one step at a time

S. D. Burz; S. Causevic; A. Dal Co; M. Dmitrijeva; P. Engel et al. 

Microbiology And Molecular Biology Reviews. 2023. Vol. 87, num. 4. DOI : 10.1128/mmbr.00063-23.

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Metabolic interaction models recapitulate leaf microbiota ecology

M. Schafer; A. R. Pacheco; R. Kunzler; M. Bortfeld-Miller; C. M. Field et al. 

Science. 2023. Vol. 381, num. 6653, p. eadf5121. DOI : 10.1126/science.adf5121.

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Optimal enzyme utilization suggests that concentrations and thermodynamics determine binding mechanisms and enzyme saturations

A. Sahin; D. R. Weilandt; V. Hatzimanikatis 

Nature Communications. 2023. Vol. 14, num. 1. DOI : 10.1038/s41467-023-38159-4.

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Recent Conference Papers, Poster and Talks

SYSTEMS BIOLOGY APPROACHES ALLOW INVESTIGATING THE SIGNALING AND METABOLIC REPROGRAMMING OF T CELLS

M. Masid; V. Hatzimanikatis; G. Coukos 

2023. Asian Transplantation Week (ATW)/ Annual congress of the Korean-Society-for-Transplantation (KST), Seoul, SOUTH KOREA, NOV 17-19, 2022. p. A20 – A20.

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A NON-CD25-BINDING IL-2 VARIANT FOR THE EXPANSION OR ENGINEERING OF T CELLS THAT CONFER SUPERIOR TUMOR CONTROL

Y. O. Miranda; M. Masid; C. J. Luna; G. M. Montalvo Bereau; T. Muller et al. 

2023. Asian Transplantation Week (ATW)/ Annual congress of the Korean-Society-for-Transplantation (KST), Seoul, SOUTH KOREA, NOV 17-19, 2022. p. A21 – A22.

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Machine Learning for Uncertainty Reduction in Biochemical Kinetic Models

L. Miskovic; J. Beal; M. Moret; V. Hatzimanikatis 

5th Conference on Constraint-Based Reconstruction and Analysis, Seattle, USA, October 14-16, 2018.

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