Warning

Please note that the publication lists from Infoscience integrated into the EPFL website, lab or people pages are frozen following the launch of the new version of platform. The owners of these pages are invited to recreate their publication list from Infoscience. For any assistance, please consult the Infoscience help or contact support.

2024

Optimality principles for the analysis of biological processes across scales: From enzyme kinetics to microbiome dynamics

A. Sahin / Director(s) : V. Hatzimanikatis

Lausanne: EPFL

2024

p. 237.

DOI : 10.5075/epfl-thesis-10518

2024

Optimality principles for the analysis of biological processes across scales: From enzyme kinetics to microbiome dynamics

Reconstruction and analysis of genome-scale metabolic networks in single organisms and microbial communities

Neuroprotection in the Retina: From Preventing Inflammatory Cell Death to Promoting Vascular Stability in the Central Nervous System

2023

Expanding computational biochemistry towards complex and non-natural compounds

Modeling, analysis, and design of complex biological networks

2022

An optimized high throughput platform, from genetic transformation to fermentation, to screen for secreted laccases in Aspergillus niger

2021

Modelling the Intracellular Environment under Uncertainty, from Post-translational Modification to Metabolic Networks

New and improved methods for integrated models of metabolism and gene expression

2020

Algorithms and flowchart for the design of synthetic biochemical networks

Optimization methods and objective functions for analysis of metabolic network models

Modeling biochemical reaction networks in complex intracellular environments

Modeling metabolic and signaling pathways in cancer cells

Modeling, predicting and mining metabolism at atom-level resolution

Mapping and Analysis of the Complexity of Lipid Metabolism for Applications in Health and Sustainability

2019

Towards comprehensive and consistent kinetic models of metabolism under uncertainty

Computational studies of industrial hosts for improved production of the 2nd generation of biofuels

2018

Analysis of cellular and drug action mechanisms in the malaria parasites using systems biology approaches

Modeling and analysis of parts and devices of genetic regulation

2017

Computational methods and modeling of cellular function for the optimization of protein production and the study of cellular disease states

Novel systems biology approaches for design and analysis of palmitoylation networks reveal its regulatory effects on protein stability, activity and localization

2016

Navigating and Managing the Complexity of Genome Scale Metabolic Networks for Studies in Cellular Physiology and Industrial Biotechnology

Enhancing the photo-Fenton treatment of contaminated water by use of ultrasound and iron-complexing agents

2015

Computational Studies on Cellular Metabolism

Reconstruction and systems analysis of metabolism in apicomplexan parasites Toxoplasma gondii and Plasmodium falciparum

Computational studies on Escherichia coli metabolism

2014

Mathematical models and computational methods for the analysis of genome-scale protein synthesis

2013

Metabolic modeling and experimental studies on carbon and energy metabolism of Mycobacterium tuberculosis

Computational Studies on Cellular Bioenergetics