Link to our full publication list on PubMed.
Placzek S, Vanzan L, Deluz C, Suter DM. Orchestration of pluripotent stem cell genome reactivation during mitotic exit
Cell Reports
Tollenaere A, Ugur E, Deluz C, Leonhardt H, Suter DM. Mechanistic basis of gene regulation by SRCAP and H2A.Z
bioRxiv
Sakong S, Fierz B, Suter DM. Electrostatic properties of disordered regions control transcription factor search and pioneer activity
bioRxiv
Sun MS, Martin B, Dembska J, Deluz C, Suter DM. Core passive and facultive mTOR-mediated mechanisms coordinate mammalian protein synthesis and decay
bioRxiv
2024
ERK signalling eliminates Nanog and maintains Oct4 to drive the formative pluripotency transition.
PNAS
Eisele AS, Tarbier M, Dormann AA, Pelechano V, Suter DM. Gene-expression memory-based prediction of cell lineages from scRNA-seq datasets
Nature Communications
2023
Martin B, Suter DM. Gene expression flux analysis reveals specific regulatory modalities of gene expression
iScience
Martin B, Suter DM. An out-of-equilibrium definition of protein turnover
BioEssays
2020
Suter DM†. Transcription Factors and DNA Play Hide and Seek †Corresponding author.
Trends in Cell Biology
2019
Friman ET, Deluz C, Meireles-Filho A, Govindan A, Gardeux V, Deplancke B, Suter DM†. Dynamic regulation of chromatin accessibility by pluripotency transcription factors across the cell cycle. †Corresponding author
eLife
Tidin O, Friman ET, Naef F†, Suter DM†. Quantitative relationships between SMAD dynamics and target gene activation kinetics in single live cells. †Equal contribution and co-corresponding authors
Scientific Reports
Alber AB, Suter DM. Dynamics of Protein Synthesis and Degradation through the Cell Cycle.
Cell Cycle
Strebinger D*, Deluz C*, Friman ET*, Govindan S, Alber AB, Suter DM†. Endogenous fluctuations of OCT4 and SOX2 bias pluripotent cell fate decisions. *Equal contribution; †Corresponding author
Molecular Systems Biology
Phillips NE*, Mandic A*, Omidi S, Naef F†, Suter DM†. Memory and relatedness of transcriptional activity in mammalian cell lineages. *Equal contribution; †Equal contribution and Corresponding authors
Nature Communications
Raccaud M, Alber AB, Friman ET, Agarwal H, Deluz C, Kuhn T, Gebhardt JCM, Suter DM†.Mitotic chromosome binding predicts transcription factor properties in interphase. †Corresponding author
Nature Communications
Callegari A, Sieben C, Benke A, Suter DM, Fierz B, Mazza D, Manley SSingle-molecule dynamics and genome-wide transcriptomics reveal that NF-kB (p65)-DNA binding times can be decoupled from transcriptional activation.
PLoS Genetics
2018
Alber AB*, Paquet ER*, Biserni M, Naef F, Suter DM. Single Live Cell Monitoring of Protein Turnover Reveals Intercellular Variability and Cell-Cycle Dependence of Degradation Rates
Molecular Cell
Nicolas D, Zoller B, Suter DM, Naef F. Modulation of transcriptional burst frequency by histone acetylation.
PNAS
Alber AB, Suter DM. Single-Cell Quantification of Protein Degradation Rates by Time-Lapse Fluorescence Microscopy in Adherent Cell Culture.
Journal of Visualized Experiments.
2017
Delachat AM, Guidotti N, Bachmann AL, Meireles-Filho ACA, Pick H, Lechner CC, Deluz C, Deplancke B, Suter DM, Fierz B. Engineered Multivalent Sensors to Detect Coexisting Histone Modifications in Living Stem Cells.
Cell Chemical Biology
Raccaud M, Suter DM. Transcription factor retention on mitotic chromosomes: regulatory mechanisms and impact on cell fate decisions.
FEBS letters
Mandic A, Strebinger D, Regali C, Phillips NE, Suter DM. A novel method for quantitative measurements of gene expression in single living cells
Methods Link to PDF
Deluz C, Strebinger D, Friman ET, Suter DM. The elusive role of mitotic bookmarking in transcriptional regulation: insights from Sox2.
Cell Cycle Link to PDF
2016
Deluz C, Friman ET, Strebinger D, Benke A, Raccaud M, Callegari A, Leleu M, Manley S, Suter DM. A role for mitotic bookmarking of SOX2 in pluripotency and differentiation.
Genes & Development Link to PDF
2014
Zhao ZW*, Roy R*, Gebhardt JCM*, Suter DM*, Chapman A, Xie XS. Spatial organization of RNA polymerase II inside a mammalian cell nucleus revealed by reflected light-sheet superresolution microscopy. *Equal contribution
PNAS
2013
Molina N*, Suter DM*†, Zoller B, Gotic I, Naef F†. Stimulus-induced modulation of transcriptional bursting in a single mammalian gene. *Equal contribution; †Corresponding authors
PNAS
Zhao ZW, Gebhardt JC, Suter DM, Xie XS. Reply to “Convergence of chromatin binding estimates in live cells”.
Nature Methods
Gebhardt JCM* Suter DM*, Roy R, Zhao ZW, Chapman A, Basu S, Maniatis T, Xie XS. Probing Transcription Factor DNA Binding at the Single Molecule Level in Live Mammalian Cells. *Equal contribution.
Nature Methods 2013 repository/default/content/sites/suter-lab/files/Gebhardt, Suter et al.pdf
2012
Kern I, Xu R, Julien S, Suter DM, Preynat-Seauve O, Baquié M, Poncet A, Combescure C, Stoppini L, van Thriel C, Krause KH. Embryonic stem cell-based screen for small molecules: cluster analysis reveals four response patterns in developing neural cells.
Current Medicinal Chemistry
Stratmann M*, Suter DM*, Molina N, Naef F, Schibler U. Circadian Dbp Transcription Relies on Highly Dynamic BMAL1-CLOCK Interaction with E Boxes and Requires the Proteasome. *Equal contribution.
Molecular Cell
2011
Suter DM, Molina N, Naef F, Schibler U. Origins and consequences of transcriptional discontinuity.
Current Opinion in Cell Biology
Saini C, Suter DM, Liani A, Gos P, Schibler U. The Mammalian Circadian Timing System: Synchronization of Peripheral Clocks.
Cold Spring Harbor Symposia in Quantitative Biology. 2011
Clément S, Peyrou M, Sanchez-Pareja A, Bourgoin L, Ramadori P, Suter D, Vinciguerra M, Guilloux K, Pascarella S, Rubbia-Brandt L, Negro F, Foti M. Down-regulation of phosphatase and tensin homolog by hepatitis C virus core 3a in hepatocytes triggers the formation of large lipid droplets.
Hepatology
Suter DM*, Molina N*, Gatfield D, Schneider K, Schibler U, Naef F. Mammalian genes are transcribed with widely different bursting kinetics. *Equal contribution
Science
2010
Zhang J, Lu JP, Suter DM, Krause KH, Fini ME, Chen B, Lu Q. Isoform- and dose-sensitive feedback interactions between paired box 6 gene and delta-catenin in cell differentiation and death.
Experimental Cell Research
2009
Suter DM, Schibler U. Physiology. Feeding the clock.
Science
Suter DM, Preynat-Seauve O, Tirefort D, Feki A, Krause KH. Phenazopyridine induces and synchronizes neuronal differentiation of embryonic stem cells.
Journal of Cellular and Molecular Medicine
Preynat-Seauve O, Suter DM, Tirefort D, Turchi L, Virolle T, Chneiweiss H, Foti M, Lobrinus JA, Stoppini L, Feki A, Dubois-Dauphin M, Krause KH. Development of human nervous tissue upon differentiation of embryonic stem cells in three-dimensional culture.
Stem Cells
Suter DM, Tirefort D, Julien S, Krause KH. A Sox1 to Pax6 switch drives neuroectoderm to radial glia progression during differentiation of mouse embryonic stem cells.
Stem Cells
2008
Suter DM, Krause KH. Neural commitment of embryonic stem cells: molecules, pathways and potential for cell therapy.
Journal of Pathology
Aberdam E, Barak E, Rouleau M, de LaForest S, Berrih-Aknin S, Suter DM, Krause KH, Amit M, Itskovitz-Eldor J, Aberdam D. A pure population of ectodermal cells derived from human embryonic stem cells.
Stem Cells
2007
Suter DM, Montet X, Tirefort D, Cartier L, Krause KH. A tetracycline-inducible lentivector system based on EF1-α promoter and native tetracycline repressor allows in vivo gene induction in implanted ES cells.
Journal of Stem Cells
Radcliffe CM, Arnold JN, Suter DM, Wormald MR, Harvey DJ, Royle L, Mimura Y, Kimura Y, Sim RB, Inogès S, Rodriguez-Calvillo M, Zabalegui N, de Cerio AL, Potter KN, Mockridge CI, Dwek RA, Bendandi M, Rudd PM, Stevenson FK. Human follicular lymphoma cells contain oligomannose glycans in the antigen-binding site of the B-cell receptor.
Journal of Biological Chemistry
Suter DM, Dubois-Dauphin M, Krause KH. Genetic engineering of embryonic stem cells.
Swiss Medical Weekly
2006
Suter DM, Cartier L, Bettiol E, Tirefort D, Jaconi ME, Dubois-Dauphin M, Krause KH. Rapid generation of stable transgenic embryonic stem cell lines using modular lentivectors.
Stem Cells
2005
Arnold JN, Wormald MR, Suter DM, Radcliffe CM, Harvey DJ, Dwek RA, Rudd PM, Sim RB. Human serum IgM glycosylation: identification of glycoforms that can bind to mannan-binding lectin.
Journal of Biological Chemistry